Function reference • SCWorkflow

All functions
`annotateCellTypes()`	Annotating cell types using SingleR module
`appendMetadataToSeuratObject()`	Append Metadata to Seurat Object.
`colorByGene()`	Visualize gene expression for provided Genes across your cells as a heatmap
`colorByMarkerTable()`	Color by Gene List
`combineNormalize()`	Combine & Normalize
`degGeneExpressionMarkers()`	DEG (Gene Expression Markers)
`dotPlotMet()`	Dotplot of Gene Expression by Metadata
`dualLabeling()`	Plot coexpression of 2 markers using transcript and/or protein expression values
`filterQC()`	Filter & QC Samples
`filterSeuratObjectByMetadata()`	Filter Seurat Object by Metadata
`harmonyBatchCorrect()`	Harmony Batch Correction from Singular Value Decomposed PCA
`heatmapSC()`	Heatmap of transcript and/or protein expression values in single cells
`modScore()`	Compute ModScore
`nameClusters()`	Update metadata slot of Seurat-class object with custom labels and provide plot with percentage of cell types
`palantir_api_call()`	palantir_api_call Utility function from 3D tSNE Coordinate Template from v 75#'
`plotMetadata()`	Plotting (i.e. coloring with) different columns of your Metadata Table
`processRawData()`	Process Raw Data
`reclusterFilteredSeuratObject()`	Recluster Filtered Seurat Object.
`reclusterSeuratObject()`	Recluster Seurat Object.
`tSNE3D()`	Plot 3D-TSNE given a Seurat Object and returns plotly image
`violinPlot()`	Violin Plot by Metadata

Reference